7.4.2

This is the 7.4.2 release. Below are listed the bug fixes and feature additions that have gone into this release.

Known Issues

  • Synthetic Building Filters are not yet implemented

  • Long visualization operations can lock up the GUI. Please be patient for those operations to end.

  • Compute Feature Centroids will not respect periodic boundaries in a model

  • The Anaconda version will not save your GUI window layout correctly. The workaround is to create a layout to your liking and save it as a preset.

  • Computing Volumes from Triangle Features will not work correctly unless all triangle normals are consistent and the surface mesh is watertight.

Feature & Bug Fixes of Note

  • New Quad View visualization module with synchronized 3D volume rendering and three orthogonal or oblique slice views, thick-slab projections, measurement rulers, markers, and comprehensive color controls.

  • Major charting improvements, including multi-series histograms, grouped or overlaid bars, cumulative distribution curves, secondary axes, and unified chart navigation.

  • Generate complete Python scripts and filter snippets directly from pipelines, bookmarks, and the Filter List.

New Filters

  • Group MicroTexture Regions groups neighboring features in hexagonal materials when their c-axes are aligned within a specified tolerance.

  • Keep/Remove Ranked Features keeps or removes features by rank, count, percentage, or contribution to a measured quantity.

  • Create Surface Mesh (M3C Multi-Material Marching Cubes) generates a conformal triangle mesh from a segmented multi-feature volume.

  • Read Image is a non-ITK replacement for Read Image (ITK) that reads a PNG, JPEG, BMP, or TIFF image into an Image Geometry.

  • Read NIfTI File (Version 1) reads .nii and compressed .nii.gz scientific and medical volumes.

  • Regularize Z Spacing resamples serial-section data with irregular slice positions onto a uniformly spaced Z grid.

  • Write Image is a non-ITK replacement for Write Image (ITK) that writes two-dimensional images or volume slices as PNG, JPEG, BMP, or TIFF files, with optional color mapping, image flipping, and a physical scale bar.

Fixed Issues

In the below tables are summarized git logs from the commits since the last release. Each line should have a short code at the start of the line indicate a general area that the commit falls under. Also include is the Github Pull Request (PR) number. These can be fully reviewed at:

https://www.github.com/bluequartzsoftware/simplnx

https://www.github.com/bluequartzsoftware/DREAM3DNX

DREAM3D-NX

  • DOC: Update the ReadMe file with up to date information (db838d5a)

  • ENH: Create python scripts from the Pipeline View, Bookmarks View, FilterList. (#1092) (2dcf5626)

  • ENH: Unified chart navigation across application modules (#1153) (ba242618)

  • ENH: Updated clang-format to 19.1.1 (#1154) (f66708c5)

  • ENH: Charting multi-series histogram + CDF, Grouped/Overlaid layout, bin-aligned ticks, and split-view fixes (#1143) (7bedd167)

  • ENH: Render multi-component arrays in the Visualization volume view (#1140) (39708a84)

  • BUG: Fix annotations and scalar bars trapped behind the camera orientation ViewCube (#1150) (034515b4)

  • PY: Update EbsdLib to 3.1.0 for conda builds (#1152) (3d4a0723)

  • BUG: Fix hidden dock widgets floating instead of docking when shown after a state load (#1148) (0a41d90b)

  • BUG: Pipeline will now scroll if a filter is dragged to the top or bottom of pipeline (#1149) (77dba461)

  • STY: Update clang-format version to 15 (#1151) (7501d979)

  • BUG: Fix QuadView panes showing stale framebuffer before data loads (#1139) (4fe1d419)

  • BUG: Fix bar chart series display (incremental series render as lines; legend series names) (#1141) (800d8ba9)

  • BUG: Fix chart X-axis number format and None point marker (#1142) (c5eb680e)

  • ENH: Add “Clear Data Structure” action to Spreadsheet and Charting modules (#1137) (72751bc3)

  • ENH: Serve NXDream3dImportWidget preflight metadata from the preflight cache (#1138) (939f158f)

  • BUG: Fix ImportHDF5Dataset widget crash and dimension handling (#1136) (2f947d87)

  • ENH: Unify pipeline-results data size limit across display modules (#1129) (88917744)

  • ENH: Update web links to point to the new bluequartz.net website (#1131) (37b9b97c)

  • BUG: Custom color-range display & robustness fixes across visualization views (#1133) (993cbf2e)

  • BUG: Fix Bottom panel becomes hidden and unrecoverable after closing a chart (#1134) (ce5a2b15)

  • BUG: Fix .d3dstate loading crash and QuadView state-restore issues (#1130) (266023bc)

  • ENH: QuadView ruler & marker annotations (#1127) (a4e505de)

  • BUG: Fix EnsembleInfoWidget error on first row added and allow inline editing (#1128) (7b01bbdd)

  • ENH: Make visualization items’ visibility hint more obvious (#1117) (4d72ea87)

  • BUG: Fix seven long-standing slice-linking bugs in 2D Image/Slice View (#1126) (19d38aa3)

  • STY: Light theme updated palette + cross-theme widget fixes (#1124) (507f0b44)

  • ENH: Advanced Options for Editing Grid Axis (#1115) (a75d2e92)

  • Fix scalar bar range not updating for constant-valued arrays (#1123) (62647883)

  • BUG: Fix missing active array update in QuadView’s 3D view stats annotations display (#1120) (a9b28d97)

  • DOC: Update typos in URLs pointing to GitHub (#1119) (7bfaebee)

  • PY: Update conda build files to use Stb image IO library (#1118) (37e5b886)

  • ENH: Rendering performance for VXViewCubeRepresentation (#1116) (3a34d824)

  • ENH: Improve the Ruler Tool (#1112) (4da8fbd3)

  • BUG: Remove default representations on state file loading (#1114) (4fe8ede8)

  • BUG: Fix 2D Image/Slice View link slices physical units feature (#1113) (b50daea7)

  • ENH: New QuadView top level visualization module (#1080) (13fe9492)

  • ENH: update checks improvements (#1110) (7e2df80d)

  • BUG: Fix dock manager leak when re setting layouts or changing themes (#1109) (290054f8)

  • COMP: Fix folder naming conflicts in VS solutions (#1111) (46aa0ee8)

  • ENH: Allow dropping of files that have multiple file extensions like .nii.gz (#1108) (b137a819)

  • ENH: Add Quick Favorites Color Preset bar to the UI. (#1103) (87962895)

  • ENH: Update website support links (#1107) (d1c208c6)

  • BUG: Release packaging will notarize the MacOS application package. (#1106) (95777d52)

  • BUG: Fix 2D Image/Slice view full histograms not getting updated on array change or data reload (#1105) (b4f0e928)

  • BUG: Focal point vs Center of rotation interactions (#1104) (3da5c210)

  • ENH: Simplify 2D Image Slice View to remove custom OpenGL code & add transform feature (#1032) (98c2edc9)

  • ENH: Rewrite ArrayCalculator widget for new expression engine (#1087) (6493e2f3)

  • ENH: Update DynamicTableWidget and EnsembleInfoWidget to have adjustable heights (#1100) (d6750c84)

  • BUG: Ensure when DREAM3D_ENABLE_UPDATE_CHECK is off, no update check is performed (#1101) (4fc97c2e)

  • BUG: Fix transposed footer link URLs in License Dialog (#1102) (785aa5a6)

  • ENH: License Dialog Redesign (#1098) (82f68c77)

  • ENH: Improved user facing error messages. (#1097) (29c89a40)

  • ENH: Update map scalars drop down menu to have more detailed tool tip (#1099) (578c3684)

  • VERS: Update to EbsdLib v2.3.0 for builds (#1096) (68ecb9e9)

  • ENH: Improve the auto selected default dimensions for multi dimensional spreadsheets (#1094) (facaebac)

  • BUG: Fix disabled state of license dialog activation buttons when cancelling from dialog (#1095) (9e1301b7)

  • COMP: Refactor Spreadsheet and Charting modules since they do not depend on VTK any more (#1089) (8da7fcb5)

  • ENH: Histogram shows values on mouse hover or mouse interaction (#1088) (7a41c14f)

  • BUG: Fix max context size context not being current (#1091) (3eaf69c0)

  • COMP: Set Version to 7.5.0 (7014bff5)

SIMPLNX

  • VV: Read H5OINA Data Fully V&V’ed (#1728) (0f5f08e26)

  • VV: Compute Schmids Fully V&V’ed (#1723) (95768c9a8)

  • ENH: Convert pipelines to python scripts (#1572) (3151b2590)

  • BUG: Fixed stack-use-after-return asan issue with ReadStlFileTest (#1711) (d596f9808)

  • BUG: Keep the M3C surface mesh inside the input volume (#1718) (ef275cc66)

  • ENH: Add Bounding Box Skin option to the surface meshing filters (#1708) (e8a1fd57f)

  • DOC: Update filter documentation with figures and easier to read descriptions (#1589) (d65d859b5)

  • COMP: Fix clang implicit conversion warnings in parameter conversion (#1712) (d4b22b384)

  • DOC: State final-state behavior in V&V deliverables (#1725) (228c4e9bd)

  • ENH: Updated clang-format in ci to 19.1.1 (#1710) (ab55798d4)

  • VV: WriteDREAM3DFilter Fully V&V’ed (#1683) (9bcf794e9)

  • VV: Multi-Threshold Objects fully V&V’ed (#1688) (467a250d1)

  • VV: Erode Dilate Bad Data (#1687) (ea4f1ae20)

  • ENH: Harden the binary STL reader against non-conforming files (#1696) (d1accb27b)

  • FILT: Add Keep/Remove Ranked Features filter (#1700) (01d9f1106)

  • VV: Compute Feature Phases Full V&V (#1672) (bbc470e6d)

  • VV: Mark filters ‘COMPLETE’ that have been fully V&V’ed (#1701) (4d20d5696)

  • VV: Compute C Axis Locations fully V&V’ed (#1679) (165f8713a)

  • VV: Create Feature Array From Element Array Fully V&V’ed (#1695) (fa31947b5)

  • VV: Require Minimum Number of Neighbors fully V&V’ed (#1694) (0c8fa9f59)

  • VV: ITKImageWriter fully V&V’ed (#1693) (7f31001bf)

  • VV: Create Element Array from Feature Array fully V&V’ed (#1689) (2b7f72ca5)

  • ENH: Refresh stale filter arguments in example pipelines (#1677) (73bb4c7d3)

  • VV: Read Oxford Instr. EBSD Data (.ctf) fully V&V’ed (1d02339d5)

  • ENH: Add Use Feature Ids option to ComputeKernelAvgMisorientations (#1674) (a96b48332)

  • TEST: Add getBoundingBox regression tests for node geometries and ImageGeom (#1673) (d97e1464b)

  • VV: Compute Feature Sizes Full V&V + precision and 2D area fixes (#1638) (8d0b0ed22)

  • VV: Segment Features (C-Axis Misalignment) fully V&V’ed (#1685) (025333c60)

  • BUG: Fix SIMPL pipeline conversion bugs and Write Image naming (#1682) (5eb69f359)

  • BUG: Fix crash when reading geometry embedded in a DataGroup (#1676) (38b1c4e3f)

  • VV: Read EDAX EBSD Data (.ang) fully V&V’ed (#1657) (49ea8b09c)

  • FILT: Add M3C Multi-Material Marching Cubes surface meshing filter (#1662) (33c26172f)

  • ENH: Write Image color table, axis flip, and physical scale bar (#1671) (e9b16329d)

  • VV/PERF: Replace Element Attributes With Neighbor Values Complete V&V and Optimizations (#1680) (4fd0abee9)

  • FILT: Regularize Z Spacing (#1663) (24e0a29c9)

  • VV: ConvertOrientations fully V&V’ed (#1648) (220397029)

  • VV: Fill Bad Data Complete VV and minor patches (#1653) (a9d7e17e3)

  • ENH: Cache preflight metadata for .dream3d imports (#1668) (cd6229add)

  • VV: Rotate Euler Reference Frame fully V&V’ed (#1654) (11a7acdae)

  • VV: Compute Feature Neighborhoods Fully V&V’ed + Enhancements (#1652) (d967a166a)

  • BUG: Fix ComputeAvgOrientations phase gating + V&V follow-ups (#1664) (bb0cd6545)

  • VV: Compute IPF Colors fully V&V’ed (#1666) (ce6b67b5f)

  • BUG: Make preflight geometry import metadata-only (#1667) (622404900)

  • VV: ComputeFaceIPFColor is completely V&V’ed (#1646) (f5b383be6)

  • BUG: Fixed uuid search in vv_init.py (#1669) (8b7cc40f0)

  • VV: RotateSampleRefFrame fully V&V’ed + enforce principal-axis 90-degree rotations (#1651) (790d9ca18)

  • VV: Neighbor Orientation Correlation fully V&V’ed (#1655) (71526a1f5)

  • VV: Compute Feature Centroids full V&V’ed (#1658) (ded8bf33f)

  • V&V: WritePoleFigure fully V&V’ed (#1647) (64f5f27cb)

  • BUG: Make H5SUPPORT_MUTEX_LOCK a real process-wide HDF5 lock (#1643) (ea101f917)

  • DOC: Frame all V&V legacy comparisons as SIMPLNX vs 6.5.171 only (#1656) (08a784714)

  • TEST: Add coverage tests for filters flagged by the GCOV report (#1644) (f1abc9edd)

  • VV: ComputeAvgOrientations fully V&V’ed (#1645) (4f9bbc378)

  • BUG: Fix INodeGeometry0D::getBoundingBox upper-corner initialization (#1649) (a31beeb74)

  • DOC: add nikprabhu as a contributor for bug (#1622) (f936706b7)

  • BUG: Fix UniversalHermannMauguin dataset parsing in GrainMapper3D reader (#1620) (4485243cc)

  • VV: Compute Feature Neighbors fully V&V’ed (#1641) (01c9602b1)

  • VV: Identify Sample Full V&V and Minor patches (#1640) (a332e7369)

  • VV: ComputeFeatureReferenceCAxisMisorientations fully V&V’ed (#1636) (c225e8a24)

  • VV: Group Microtexture Regions fully V&V’ed (#1637) (a5da4e1f0)

  • FIX: CompareArrays all-elements check + GBCD double-precision Pi/180 (#1607) (64f6fc32e)

  • PERF: Enlarge zlib read buffer in NIfTI reader for NAS performance (#1634) (f8b56d0b6)

  • VV: EbsdLib 3.0.0 + V&V of 6 Filters (#1631) (ec22ac375)

  • ENH: Compute Feature Face Misorientation Output Rework (#1618) (7cff7f2ea)

  • BUG: Fix argument handling in nxrunner (#1627) (b2f17cc1b)

  • VV: Compute Feature Reference Misorientations fully V&V’ed (#1629) (99f3a9865)

  • ENH: Various small doc, bug and enhancement fixes. (#1626) (e198c1e2a)

  • DOC: Add jess-garnett as a contributor for doc (#1621) (2c6be49fd)

  • ENH: Parallelize Summation Loops in ComputeFeatureSizes (#1592) (aaad2c4e2)

  • DOC: Establish V&V framework — policy, oracle classes, templates (077b1dffe)

  • VERS: Updated vcpkg baseline for hwloc windows cmake build (#1624) (e8f2d377b)

  • ENH: Added PipelineFilter.update_arg() to update args in place (#1619) (d42b6653b)

  • DOC: Update Python Tutorial URLs from old .py to new .ipynb (#1614) (87a8188ff)

  • Updated vcpkg baseline for tbb 2022.3.0 (#1612) (19bb718d8)

  • ENH: Enable HDF5 dataset compression from the WriteDREAM3DFilter (#1606) (560529d05)

  • ENH: Add Image Reader/Writer that depend on Tiff and Stb libraries. (#1585) (c65c33e1b)

  • DOC: Fix documentation & discussion URLs (#1609) (8c8de6583)

  • ENH: Standardize 2D Image Handling (#1590) (e76ad508e)

  • FILT: Add ReadNIfTIFile filter for NIfTI-1 (.nii / .nii.gz) volumes (#1595) (c055dadf1)

  • ENH: Add Multiple Output Types for Sample Surface Mesh Filters (#1591) (5cbf4d46c)

  • BUG: Allow uint8 in Mask in InterpolatePointCloudToRegularGrid (#1594) (1af1baddd)

  • DOC: Correct typos across documentation (#1603) (d03d7aebc)

  • BUG: Fix SIMPL JSON conversion segfault and re-enable backwards-compatibility checks (#1605) (996d7af5a)

  • ENH: SIMPL Backwards Compatibility Test Redesign (#1588) (f854bb636)

  • ENH: WritePoleFigure filter layout code moved to EbsdLib 2.4.0 (#1587) (9b667ae0b)

  • BUG: Fix display of Phase information Ang,Ctf,GrainMapper readers (#1586) (e1fb6e3e6)

  • ENH: Rewrite ArrayCalculator filter with new expression engine (#1567) (85491bef3)

  • ENH: Compute Avg Orientations now can use von-Mises Fisher or Watson sampling (#1577) (41c079dd2)

  • ENH: Support reading of legacy statsgenerator data (#1584) (d6a4b4a4f)

  • ENH: Add missing cancel checks to lots of filters (#1582) (1a42ec6fb)

  • BUG: Fix RawBinaryReader filter and enhance with more capabilities (2e64bd159)

  • ENH: Improve error messages across the codebase (#1576) (f885a0ebc)

  • VERS: Update to EbsdLib v2.3.0 for builds (#1579) (e9f16ef1f)

  • COMP: Changes to allow the use of a local EbsdLib source directory instead of VCPKG (#1574) (da6faee7f)

  • ENH: Additional color presets to support volume rendering presets (#1573) (857bb6aae)

  • DOC: Add standardized ChoicesParameter descriptions to filter docs (#1571) (dd58a6cbb)

  • BUG/REV: Compute Feature Neighbors (#1569) (9e61b41d4)

  • STY: Changed required clang-format to 15 (#1570) (5834e211d)

  • STY: Update Clang-Format file with ‘Requires’ clause rules (#1565) (dad810701)