9.16. ITK Black Top Hat Image Filter

Black top hat extracts local minima that are smaller than the structuring element.

Group (Subgroup)

ITKMathematicalMorphology (MathematicalMorphology)

Description

Black top hat extracts local minima that are smaller than the structuring element. It subtracts the background from the input image. The output of the filter transforms the black valleys into white peaks.

Top-hats are described in Chapter 4.5 of Pierre Soille’s book “Morphological Image Analysis: Principles and Applications”, Second Edition, Springer, 2003.

Author

Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

Input Parameter(s)

Parameter Name

Parameter Type

Parameter Notes

Description

Kernel Radius

Vector of UInt32 Values

Order=X,Y,Z

The radius of the kernel structuring element.

Kernel Type

Choices

Set the kernel or structuring element used for the morphology.

Safe Border

Bool

A safe border is added to input image to avoid borders effects and remove it once the closing is done

Input Cell Data

Parameter Name

Parameter Type

Parameter Notes

Description

Image Geometry

Geometry Selection

Image

Select the Image Geometry Group from the DataStructure.

Input Cell Data

Array Selection

Allowed Types: int8, uint8, int16, uint16, int32, uint32, int64, uint64, float32, float64

The image data that will be processed by this filter.

Output Cell Data

Parameter Name

Parameter Type

Parameter Notes

Description

Output Cell Data

DataObjectName

The result of the processing will be stored in this Data Array inside the same group as the input data.

Example Pipelines

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