9.60. ITK Opening By Reconstruction Image Filter

Opening by reconstruction of an image.

Group (Subgroup)

ITKMathematicalMorphology (MathematicalMorphology)

Description

This filter preserves regions, in the foreground, that can completely contain the structuring element. At the same time, this filter eliminates all other regions of foreground pixels. Contrary to the morphological opening, the opening by reconstruction preserves the shape of the components that are not removed by erosion. The opening by reconstruction of an image “f” is defined as:

OpeningByReconstruction(f) = DilationByReconstruction(f, Erosion(f)).

Opening by reconstruction not only removes structures destroyed by the erosion, but also levels down the contrast of the brightest regions. If PreserveIntensities is on, a subsequent reconstruction by dilation using a marker image that is the original image for all unaffected pixels.

Opening by reconstruction is described in Chapter 6.3.9 of Pierre Soille’s book “Morphological Image Analysis: Principles and Applications”, Second Edition, Springer, 2003.

Author

Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

Input Parameter(s)

Parameter Name

Parameter Type

Parameter Notes

Description

Kernel Radius

Vector of UInt32 Values

Order=X,Y,Z

The radius of the kernel structuring element.

Kernel Type

Choices

Set the kernel or structuring element used for the morphology.

Fully Connected

Bool

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

PreserveIntensities

Bool

Set/Get whether the original intensities of the image retained for those pixels unaffected by the opening by reconstruction. If Off, the output pixel contrast will be reduced.

Input Cell Data

Parameter Name

Parameter Type

Parameter Notes

Description

Image Geometry

Geometry Selection

Image

Select the Image Geometry Group from the DataStructure.

Input Cell Data

Array Selection

Allowed Types: int8, uint8, int16, uint16, int32, uint32, int64, uint64, float32, float64

The image data that will be processed by this filter.

Output Cell Data

Parameter Name

Parameter Type

Parameter Notes

Description

Output Cell Data

DataObjectName

The result of the processing will be stored in this Data Array inside the same group as the input data.

Example Pipelines

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